Class: anatomical entity

A subcellular location, cell type or gross anatomical part

URI: http://w3id.org/biolink/vocab/AnatomicalEntity

Mappings

• UMLSSG:ANAT
• SIO:010046
• WD:Q4936952
• UBERON:0001062

  Inheritance

• is_a: OrganismalEntity - A named entity that is either a part of an organism, a whole organism, population or clade of organisms, excluding molecular entities
• mixin: ThingWithTaxon - A mixin that can be used on any entity with a taxon

  Children

• Cell
• CellularComponent - A location in or around a cell
• GrossAnatomicalStructure

  Used in

• class: AnatomicalEntityToAnatomicalEntityAssociation anatomical entity to anatomical entity association.object AnatomicalEntity
• class: AnatomicalEntityToAnatomicalEntityAssociation anatomical entity to anatomical entity association.subject AnatomicalEntity
• class: AnatomicalEntityToAnatomicalEntityOntogenicAssociation anatomical entity to anatomical entity ontogenic association.object AnatomicalEntity
• class: AnatomicalEntityToAnatomicalEntityOntogenicAssociation anatomical entity to anatomical entity ontogenic association.subject AnatomicalEntity
• class: AnatomicalEntityToAnatomicalEntityPartOfAssociation anatomical entity to anatomical entity part of association.object AnatomicalEntity
• class: AnatomicalEntityToAnatomicalEntityPartOfAssociation anatomical entity to anatomical entity part of association.subject AnatomicalEntity
• class: DiseaseOrPhenotypicFeatureAssociationToLocationAssociation disease or phenotypic feature association to location association.object AnatomicalEntity
• class: GeneOrGeneProduct expressed in AnatomicalEntity
• class: GeneToExpressionSiteAssociation gene to expression site association.object AnatomicalEntity

  Fields

• expresses subsets: (translator_minimal)
  • Description: holds between an anatomical entity and gene or gene product that is expressed there
  • range: GeneOrGeneProduct
  • Local
• category subsets: (translator_minimal)
  • Description: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag
  • range: IriType*
  • inherited from: NamedThing
• description subsets: (translator_minimal)
  • Description: a human-readable description of a thing
  • range: NarrativeText
  • inherited from: NamedThing
• full name
  • Description: a long-form human readable name for a thing
  • range: LabelType
  • inherited from: NamedThing
• has phenotype subsets: (translator_minimal)
  • Description: holds between a biological entity and a phenotype, where a phenotype is construed broadly as any kind of quality of an organism part, a collection of these qualities, or a change in quality or qualities (e.g. abnormally increased temperature).
  • range: Phenotype
  • inherited from: BiologicalEntity
• id subsets: (translator_minimal)
  • Description: A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI
  • range: IdentifierType
  • inherited from: NamedThing
• in taxon subsets: (translator_minimal)
  • Description: connects a thing to a class representing a taxon
  • range: OrganismTaxon
  • inherited from: ThingWithTaxon
• iri subsets: (translator_minimal)
  • Description: An IRI for the node. This is determined by the id using expansion rules.
  • range: IriType
  • inherited from: NamedThing
• name subsets: (translator_minimal)
  • Description: A human-readable name for a thing
  • range: LabelType
  • inherited from: NamedThing
• node property
  • Description: A grouping for any property that holds between a node and a value
  • range: string
  • inherited from: NamedThing
• related to
  • Description: A grouping for any relationship type that holds between any two things
  • range: NamedThing
  • inherited from: NamedThing
• systematic synonym
  • Description: more commonly used for gene symbols in yeast
  • range: LabelType
  • inherited from: NamedThing