Class: occurrent

A processual entity

URI: http://w3id.org/biolink/vocab/Occurrent

Mappings

• BFO:0000003

  Inheritance

• is_a: NamedThing - a databased entity or concept/class

  Children

• ActivityAndBehavior - Activity or behavior of any independent integral living, organization or mechanical actor in the world
• Phenomenon - a fact or situation that is observed to exist or happen, especially one whose cause or explanation is in question
• Procedure - A series of actions conducted in a certain order or manner
• BiologicalProcess (mixin) - One or more causally connected executions of molecular functions
• EnvironmentalProcess (mixin)
• MolecularActivity (mixin) - An execution of a molecular function carried out by a gene product or macromolecular complex.

  Used in

• class: NamedThing actively involved in Occurrent
• class: NamedThing capable of Occurrent
• class: Occurrent negatively regulates, process to process Occurrent
• class: NamedThing participates in Occurrent
• class: Occurrent positively regulates, process to process Occurrent
• class: Occurrent precedes Occurrent
• class: Occurrent regulates, process to process Occurrent

  Fields

• has input subsets: (translator_minimal)
  • Description: holds between a process and a continuant, where the continuant is an input into the process
  • range: NamedThing
  • Local
• has participant subsets: (translator_minimal)
  • Description: holds between a process and a continuant, where the continuant is somehow involved in the process
  • range: NamedThing
  • Local
• precedes subsets: (translator_minimal)
  • Description: holds between two processes, where one completes before the other begins
  • range: Occurrent
  • Local
• regulates, process to process subsets: (translator_minimal)
  • Description: describes an entity that has a direct affect on the state or quality of another existing entity. Use of the ‘affects’ predicate implies that the affected entity already exists, unlike predicates such as ‘affects risk for’ and ‘prevents, where the outcome is something that may or may not come to be.
  • range: Occurrent
  • Local
• category subsets: (translator_minimal)
  • Description: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag
  • range: IriType*
  • inherited from: NamedThing
• description subsets: (translator_minimal)
  • Description: a human-readable description of a thing
  • range: NarrativeText
  • inherited from: NamedThing
• full name
  • Description: a long-form human readable name for a thing
  • range: LabelType
  • inherited from: NamedThing
• id subsets: (translator_minimal)
  • Description: A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI
  • range: IdentifierType
  • inherited from: NamedThing
• iri subsets: (translator_minimal)
  • Description: An IRI for the node. This is determined by the id using expansion rules.
  • range: IriType
  • inherited from: NamedThing
• name subsets: (translator_minimal)
  • Description: A human-readable name for a thing
  • range: LabelType
  • inherited from: NamedThing
• node property
  • Description: A grouping for any property that holds between a node and a value
  • range: string
  • inherited from: NamedThing
• related to
  • Description: A grouping for any relationship type that holds between any two things
  • range: NamedThing
  • inherited from: NamedThing
• systematic synonym
  • Description: more commonly used for gene symbols in yeast
  • range: LabelType
  • inherited from: NamedThing