Class: pairwise interaction association

An interaction at the molecular level between two physical entities

URI: http://w3id.org/biolink/vocab/PairwiseInteractionAssociation

Mappings

Inheritance

• is_a: Association - A typed association between two entities, supported by evidence

  Children

• PairwiseGeneToGeneInteraction (mixin) - An interaction between two genes or two gene products. May be physical (e.g. protein binding) or genetic (between genes). May be symmetric (e.g. protein interaction) or directed (e.g. phosphorylation)

  Used in

Fields

• pairwise interaction association.interacting molecules category
  • range: OntologyClass
  • Local
• pairwise interaction association.id subsets: (translator_minimal)
  • Description: identifier for the interaction. This may come from an interaction database such as IMEX.
  • range: IdentifierType
  • Local
• pairwise interaction association.object
  • Description: connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object.
  • range: MolecularEntity [required]
  • Local
• pairwise interaction association.relation
  • Description: interaction relationship type
  • range: RelationshipType [required]
  • edge label: molecularly interacts with subsets: (translator_minimal)
  • Local
• pairwise interaction association.subject
  • Description: connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object.
  • range: MolecularEntity [required]
  • Local
• association slot
  • Description: any slot that relates an association to another entity
  • range: string
  • inherited from: Association
• association type
  • Description: connects an association to the type of association (e.g. gene to phenotype)
  • range: OntologyClass
  • inherited from: Association
• category subsets: (translator_minimal)
  • Description: Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag
  • range: IriType*
  • inherited from: NamedThing
• description subsets: (translator_minimal)
  • Description: a human-readable description of a thing
  • range: NarrativeText
  • inherited from: NamedThing
• full name
  • Description: a long-form human readable name for a thing
  • range: LabelType
  • inherited from: NamedThing
• iri subsets: (translator_minimal)
  • Description: An IRI for the node. This is determined by the id using expansion rules.
  • range: IriType
  • inherited from: NamedThing
• name subsets: (translator_minimal)
  • Description: A human-readable name for a thing
  • range: LabelType
  • inherited from: NamedThing
• negated
  • Description: if set to true, then the association is negated i.e. is not true
  • range: boolean
  • inherited from: Association
• node property
  • Description: A grouping for any property that holds between a node and a value
  • range: string
  • inherited from: NamedThing
• provided by
  • Description: connects an association to the agent (person, organization or group) that provided it
  • range: Provider
  • inherited from: Association
• publications
  • Description: connects an association to publications supporting the association
  • range: Publication*
  • inherited from: Association
• qualifiers
  • Description: connects an association to qualifiers that modify or qualify the meaning of that association
  • range: OntologyClass*
  • inherited from: Association
• related to
  • Description: A grouping for any relationship type that holds between any two things
  • range: NamedThing
  • inherited from: NamedThing
• systematic synonym
  • Description: more commonly used for gene symbols in yeast
  • range: LabelType
  • inherited from: NamedThing